Bioconductor Batch Effect Correction

Showing : Batch Effect Correction • reset

vote

replies

3.1k

views

DESeq2 sva svaseq batch effect correction

6.3 years ago L_K • 0

votes

replies

2.0k

views

scan.upc upc normalization batch effect correction

updated 5.7 years ago by Stephen Piccolo ▴ 590 • written 5.7 years ago by y.li.1 • 0

votes

replies

1.6k

views

Limma differential gene expression batch effect correction covariates

updated 5.9 years ago by Gordon Smyth 50k • written 5.9 years ago by abelsousa • 0

votes

replies

1.2k

views

deseq2 interactions batch effect correction grouping variable

updated 5.6 years ago by Michael Love 41k • written 5.6 years ago by mat.lesche ▴ 90

votes

replies

1.2k

views

sva svaseq batch effect batch effects batch effect correction

6.7 years ago vedran.franke • 0

vote

1.0k

views

batch effect correction sva proteomics

5.4 years ago Sebastian Hesse ▴ 70

vote

1.0k

views

limma voom Batch Effect Correction

updated 7.0 years ago by Aaron Lun ★ 28k • written 7.0 years ago by Dario Strbenac ★ 1.5k

vote

780

views

batch effect limma batch effect correction

updated 5.1 years ago by Gordon Smyth 50k • written 5.1 years ago by ginlucks • 0

votes

replies

741

views

pvca batch effect batch effect correction

5.4 years ago Sebastian Hesse ▴ 70

9 results • Page 1 of 1

Recent ...

Replies

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

Awards • All